I build my own but use input from the boutique shops as far as parts and compatibility goes. If some boutique sells a rig with x parts, you can be sure they've done the work of testing compatibility, stability, processing powa, etc. Why not take advantage of that? You'll likely get at least 90 percent of their bench results, they might have an edge on sweetheart drivers and os configs from their respective makers that aren't commonly available to non boutique builders, however.
My next sdr build is a low power rig, 15w workstation vid card, dual cpus @ 20w max, ecc mem, server os, laptop hdds, real hardware accelerated soundcard, etc. Might go scsi on this one as I have the parts, scsi stuff is made for reliability not often found in today's parts.